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Tools & Information Resources

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FIJI

Fiji is an image processing package — a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.

QuPath

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QuPath is a cross-platform, user-friendly and developer-friendly software for digital pathology and whole slide image analysis.

MicrobeJ

MicrobeJ was developed as a plug-in to be used with ImageJ or Fiji to analyze microscopy images of bacteria. It provides a user-friendly interface and a powerful suite of detection, analysis and data presentation tools.

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µlist

A searchable database of resources.

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Fpbase

FPbase is a free and open-source, community-editable database for fluorescent proteins (FPs) and their properties. The primary objective is to aggregate structured and searchable FP data that is of interest to the imaging community and FP developer.

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