top of page
HeLa_CellMaskGreen_1x_.tif (RGB) (1).png

Tools & Information

FIJI.png

FIJI

Fiji is an image processing package — a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.

FPbase.png

Fpbase

FPbase is a free and open-source, community-editable database for fluorescent proteins (FPs) and their properties. The primary objective is to aggregate structured and searchable FP data that is of interest to the imaging community and FP developer.

MicrobeJ

MicrobeJ was developed as a plug-in to be used with ImageJ or Fiji to analyze microscopy images of bacteria. It provides a user-friendly interface and a powerful suite of detection, analysis and data presentation tools.

OpenScopes

Screenshot_10-2-2025_8495_openscopes.com.jpeg

OpenScopes aims to enable users to assemble, maintain and upgrade their own low-cost but advanced capability instruments using modular components and open source software, and also to provide a cost-effective means to recycle or upgrade existing microscopes to advanced imaging capabilities.

OMERO

Screenshot_10-2-2025_85331_www.openmicroscopy.org.jpeg

From the microscope to publication, OMERO handles all your images in a secure central repository. You can view, organize, analyze and share your data from anywhere you have internet access.

QuPath

QuPath.png

QuPath is a cross-platform, user-friendly and developer-friendly software for digital pathology and whole slide image analysis.

µlist 2_edited.jpg

µlist

A searchable database of resources.

bottom of page